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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015890836.1_cds_XP_016445534.1_40483
CDS Infomation

[gene=LOC107770720] [db_xref=GeneID:107770720] [protein=LOW QUALITY PROTEIN: homogentisate 1,2-dioxygenase-like] [exception=unclassified translation discrepancy] [protein_id=XP_016445534.1] [location=complement(join(21921..21965,21968..22192,23446..23529,23606..23760,23872..23941,24077..24252,24333..24500,24604..24683,25322..25552,26080..26297))] [gbkey=CDS]
Sequence

ATGGAGTGCAAAGATAGCAGTATCACTTCCCACTGTTGTAACAAATTTCCCTCTGATTTG
GAGTACCAATCAGGATTCGGGAATCACTTCTCATCTGAAGCTATAGTTGGAGCTCTACCT
CAAGGTCAAAACAGTCCTCTTATTTGCCCCTTTGGCCTTTATGCTGAGCAGATCTCTGGC
ACCTCTTTTACTTCCCCTCGCAAACTTAACCAACGCAGTTGGCTATATCGTATTAAGCTA
TCAGTTACACATGAACCATTTAGACCAAGACTACCAAGACATGAAAAGCTTGTGAGTGAG
TTCGACCAGTCAAACAGTTCTGCCACACCAACTCAACTAAGGTGGAAGCCGGTGGAGATA
CCAGAAACACCAACAGATTTCATTGATGGTTTGTACACGATATGCGGGGCTGGCAGCTCA
TATCTCCGGCATGGTTTTGCAATTCACATGTACACTGCCAACAAATCAATGGAGAACTGT
GCCTTCTGCAATGCCGATGGTGATTTTCTGATTGTTCCTCAACAAGGAAGGCTGTGGATT
ACAACTGAATGCGGAAGATTGCAGGTTTCTCCTGGTGAAATAGTGATTTTGCCTCAAGGA
TTTCGATTTTCTGTTGACCTTCCAGATGGACCTTCACGTGGTTACGTTGCTGAAATTTTT
GGAACTCATCTTCAACTTCCTGATCTGGGGCCAATAGGTGCAAATGGTCTGGCTGCTCCG
AGGGATTTTCTTGTTCCTGTTGCCTGGTATGAAGATGGCTCCCAGCCAGGTTACACTATT
GTGCAGAAGTATGGTGGTGAACTCTTCACTGCGAAGCAAGACTTTTCTCCTTTTAATGTG
GTCGCTTGGCATGGCAATTATGTTCCTTATAAGTATGATTTAAGCAAGTTCTGCCCTTAC
AATACTGTACTGATTGACCACAGTGATCCTTCAATAAATACAGTTTTGACAGCACCAACG
GATAAACCTGGTGTGGCATTACTTGACTTTGTCATTTTTCCTCCCCGGTGGTTGGTTGCT
GAACACACCTTCCGTCCTCCATATTATCATCGCAATTGTATGAGCGAATTTATGGGTCTA
ATCTATGGGGGTTACGAGGCAAAAGCTGATGGTTTTCACCCTGGTGGGGCTAGCCTTCAT
AGCTGCATGACTCCTCATGGTCCCGATACCAAAACGTATGAGGCTACTATTGCACTTGGA
AATGAAGCTGGTCCACATAAAATAGCTGATACAATGGCTTTTATGTTCGAGTCTTGTCTA
ATACCCCGAGTCTGTCCGTGGGCACTTGAATCTCCATTTATGGATCATGATTATTATCAA
TGCTGGATCGGCTTGAAGTCTCACTTCTCAGGACTATCCATGAAAGAAGACAACATCAAT
TTTCAGAATGGAAAACCAGTGGAAAGGAAATGGAAGATGCTAATTGTTCAGCTAGCTTCT
GTAGTTCTATAA

Peptide Sequence

PEP ID

XP_016445534.1
PEP Infomation

PREDICTED: LOW QUALITY PROTEIN: homogentisate 1,2-dioxygenase-like [Nicotiana tabacum]
Sequence

MECKDSSITSHCCNKFPSDLEYQSGFGNHFSSEAIVGALPQGQNSPLICPFGLYAEQISG
TSFTSPRKLNQRSWLYRIKLSVTHEPFRPRLPRHEKLVSEFDQSNSSATPTQLRWKPVEI
PETPTDFIDGLYTICGAGSSYLRHGFAIHMYTANKSMENCAFCNADGDFLIVPQQGRLWI
TTECGRLQVSPGEIVILPQGFRFSVDLPDGPSRGYVAEIFGTHLQLPDLGPIGANGLAAP
RDFLVPVAWYEDGSQPGYTIVQKYGGELFTAKQDFSPFNVVAWHGNYVPYKYDLSKFCPY
NTVLIDHSDPSINTVLTAPTDKPGVALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGL
IYGGYEAKADGFHPGGASLHSCMTPHGPDTKTYEATIALGNEAGPHKIADTMAFMFESCL
IPRVCPWALESPFMDHDYYQCWIGLKSHFSGLSMKEDNINFQNGKPVERKWKMLIVQLAS
VVL

Transcript Sequence

Gene sequence data has not been registered.